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Shiny application for interacting with GA4GH-based data servers

Bioconductor version: Release (3.18)

GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHshiny")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

GA4GHshiny HTML R Script
Reference Manual PDF


biocViews GUI, Software
Version 1.24.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL-3
Depends GA4GHclient
Imports AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes
System Requirements
URL https://github.com/labbcb/GA4GHshiny
Bug Reports https://github.com/labbcb/GA4GHshiny/issues
See More
Suggests BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHshiny_1.24.0.tar.gz
Windows Binary GA4GHshiny_1.24.0.zip (64-bit only)
macOS Binary (x86_64) GA4GHshiny_1.24.0.tgz
macOS Binary (arm64) GA4GHshiny_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GA4GHshiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHshiny
Bioc Package Browser https://code.bioconductor.org/browse/GA4GHshiny/
Package Short Url https://bioconductor.org/packages/GA4GHshiny/
Package Downloads Report Download Stats