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EnMCB

This is the released version of EnMCB; for the devel version, see EnMCB.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models


Bioconductor version: Release (3.23)

Creation of the correlated blocks using DNA methylation profiles. Machine learning models can be constructed to predict differentially methylated blocks and disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Citation (from within R, enter citation("EnMCB")):

Xin Yu. EnMCB: Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models. doi:10.18129/B9.bioc.EnMCB, R package version 1.24.0, https://bioconductor.org/packages/EnMCB.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")
vignette HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine
Version1.24.0
In Bioconductor sinceBioC 3.11 (R-4.0) (6.5 years)
License GPL-2
Depends R (>= 4.0)
Imports survivalROC, glmnet, rms, mboost, Matrix, igraph, methods, survivalsvm, ggplot2, boot, e1071, survival, BiocFileCache
System Requirements
URL
Bug Reportshttps://github.com/whirlsyu/EnMCB/issues
See More
Suggests SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, limma, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnMCB_1.24.0.tar.gz
Windows Binary (x86_64) EnMCB_1.24.0.zip
macOS Binary (big-sur-x86_64) EnMCB_1.24.0.tgz
macOS Binary (sonoma-arm64) EnMCB_1.24.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/EnMCB
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/EnMCB
Package Short Url https://bioconductor.org/packages/EnMCB/
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