DRIMSeq
This is the released version of DRIMSeq; for the devel version, see DRIMSeq.
All Bioconductor versions of DRIMSeq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Bioconductor version: 3.23 · Package version: 1.40.0
The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.
Author: Malgorzata Nowicka [aut, cre]
Maintainer: Malgorzata Nowicka <gosia.nowicka.uzh at gmail.com>
Citation
From within R, enter citation("DRIMSeq"):
Malgorzata Nowicka. DRIMSeq: Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq. doi:10.18129/B9.bioc.DRIMSeq, R package version 1.40.0, https://bioconductor.org/packages/DRIMSeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DRIMSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.40.0 |
| License | GPL (>= 3) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10 years) |
| Downloads rank | 382 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, MultipleComparison, RNASeq, SNP, Sequencing, Software, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/DRIMSeq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DRIMSeq")| Differential transcript usage and transcript usage QTL analyses in RNA-seq with the DRIMSeq package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | DRIMSeq_1.40.0.tar.gz |
| Windows binary (x86_64) | DRIMSeq_1.40.0.zip |
| macOS binary (arm64) | DRIMSeq_1.40.0.tgz |
| macOS binary (x86_64) | DRIMSeq_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DRIMSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DRIMSeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.4.0)
Imports: utils, stats, MASS, GenomicRanges, IRanges, S4Vectors, BiocGenerics, methods, BiocParallel, limma, edgeR, ggplot2, reshape2
Suggests: PasillaTranscriptExpr, GeuvadisTranscriptExpr, grid, BiocStyle, knitr, testthat