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CytoPipelineGUI

GUI's for visualization of flow cytometry data analysis pipelines


Bioconductor version: Release (3.18)

This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

Author: Philippe Hauchamps [aut, cre] , Laurent Gatto [aut] , Dan Lin [ctb]

Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>

Citation (from within R, enter citation("CytoPipelineGUI")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CytoPipelineGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoPipelineGUI")
CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline HTML R Script
Demonstration of the CytoPipeline R package suite functionalities HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License GPL (>=3) | file LICENSE
Depends R (>= 4.3), CytoPipeline
Imports shiny, plotly, ggplot2, flowCore
System Requirements
URL
See More
Suggests testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CytoPipelineGUI_1.0.0.tar.gz
Windows Binary CytoPipelineGUI_1.0.0.zip (64-bit only)
macOS Binary (x86_64) CytoPipelineGUI_1.0.0.tgz
macOS Binary (arm64) CytoPipelineGUI_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CytoPipelineGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CytoPipelineGUI
Bioc Package Browser https://code.bioconductor.org/browse/CytoPipelineGUI/
Package Short Url https://bioconductor.org/packages/CytoPipelineGUI/
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