Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Bioconductor version: Release (3.19)
A pipeline for analysing Capture Hi-C data.
Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov at lms.mrc.ac.uk>
Citation (from within R, enter
citation("Chicago")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Chicago")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Chicago")
CHiCAGO Vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Epigenetics, HiC, Sequencing, Software |
Version | 1.32.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.3.1), data.table |
Imports | matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils |
System Requirements | |
URL |
See More
Suggests | argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub |
Linking To | |
Enhances | |
Depends On Me | PCHiCdata |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Chicago_1.32.0.tar.gz |
Windows Binary | Chicago_1.32.0.zip |
macOS Binary (x86_64) | Chicago_1.32.0.tgz |
macOS Binary (arm64) | Chicago_1.32.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Chicago |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Chicago |
Bioc Package Browser | https://code.bioconductor.org/browse/Chicago/ |
Package Short Url | https://bioconductor.org/packages/Chicago/ |
Package Downloads Report | Download Stats |