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An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations

Bioconductor version: Release (3.19)

CaMutQC is able to filter false positive mutations generated due to technical issues, as well as to select candidate cancer mutations through a series of well-structured functions by labeling mutations with various flags. And a detailed and vivid filter report will be offered after completing a whole filtration or selection section. Also, CaMutQC integrates serveral methods and gene panels for Tumor Mutational Burden (TMB) estimation.

Author: Xin Wang [aut, cre]

Maintainer: Xin Wang <sylviawang555 at>

Citation (from within R, enter citation("CaMutQC")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

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Reference Manual PDF


biocViews GeneTarget, QualityControl, Software
Version 1.0.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License GPL-3
Depends R (>= 4.0.0)
Imports ggplot2, dplyr,, vcfR, clusterProfiler, stringr, DT, MesKit, maftools, data.table, utils, stats, methods, tidyr
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Follow Installation instructions to use this package in your R session.

Source Package CaMutQC_1.0.0.tar.gz
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macOS Binary (x86_64) CaMutQC_1.0.0.tgz
macOS Binary (arm64) CaMutQC_1.0.0.tgz
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