CTDquerier

DOI: 10.18129/B9.bioc.CTDquerier    

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: Release (3.7)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut, cre], Jaun R. Gonzalez [aut]

Maintainer: Carles Hernandez-Ferrer <carles.hernandez at isglobal.org>

Citation (from within R, enter citation("CTDquerier")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CTDquerier")

Documentation

HTML R Script Case study on Environmental Chemicals and asthma-related genes
HTML R Script CTDquerier: A package to retrieve CTDbase data for downstream analysis and data visualization
HTML R Script Simple comparison between CTDquerier R package and CTDbase Batch Query web tool
PDF   Reference Manual
Text   LICENSE

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version 1.0.0
License MIT + file LICENSE
Depends R (>= 3.4.0)
Imports RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache, rappdirs
LinkingTo
Suggests BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTDquerier_1.0.0.tar.gz
Windows Binary CTDquerier_1.0.0.zip
Mac OS X 10.11 (El Capitan) CTDquerier_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTDquerier
Package Short Url http://bioconductor.org/packages/CTDquerier/
Package Downloads Report Download Stats

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