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CTDquerier

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.

Package for CTDbase data query, visualization and downstream analysis


Bioconductor version: Release (3.18)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier EscribĂ -Montagut [cre]

Maintainer: Xavier EscribĂ -Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("CTDquerier")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
LICENSE Text

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version 2.10.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache
System Requirements
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Suggests BiocStyle, knitr, rmarkdown
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTDquerier_2.10.0.tar.gz
Windows Binary CTDquerier_2.10.0.zip (64-bit only)
macOS Binary (x86_64) CTDquerier_2.10.0.tgz
macOS Binary (arm64) CTDquerier_2.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTDquerier
Bioc Package Browser https://code.bioconductor.org/browse/CTDquerier/
Package Short Url https://bioconductor.org/packages/CTDquerier/
Package Downloads Report Download Stats