BiocWorkflowTools

This is the released version of BiocWorkflowTools; for the devel version, see BiocWorkflowTools.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Tools to aid the development of Bioconductor Workflow packages

Bioconductor version: Release (3.23)

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Author: Mike Smith [aut, cre], Andrzej Oleś [aut]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("BiocWorkflowTools")):

Mike Smith, Andrzej Oleś. BiocWorkflowTools: Tools to aid the development of Bioconductor Workflow packages. doi:10.18129/B9.bioc.BiocWorkflowTools, R package version 1.38.0, https://bioconductor.org/packages/BiocWorkflowTools.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocWorkflowTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocWorkflowTools")

Converting Rmarkdown to F1000Research LaTeX Format	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ReportWriting, Software
Version	1.38.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	BiocStyle, bookdown, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	RNAseq123
Imports Me
Suggests Me	CAGEWorkflow, recountWorkflow
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocWorkflowTools_1.38.0.tar.gz
Windows Binary (x86_64)	BiocWorkflowTools_1.38.0.zip
macOS Binary (big-sur-x86_64)	BiocWorkflowTools_1.38.0.tgz
macOS Binary (sonoma-arm64)	BiocWorkflowTools_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocWorkflowTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocWorkflowTools
Package Short Url	https://bioconductor.org/packages/BiocWorkflowTools/
Package Downloads Report	Download Stats