AffyRNADegradation
Analyze and correct probe positional bias in microarray data due to RNA degradation
Bioconductor version: 3.23 · Package version: 1.58.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffyRNADegradation")Details
| Maintainer | Mario Fasold <fasold@izbi.uni-leipzig.de> |
| Author | Mario Fasold |
| License | GPL-2 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software |
| Package Short Url | https://bioconductor.org/packages/AffyRNADegradation/ |
Citation
From within R, enter citation("AffyRNADegradation"):
Mario Fasold. AffyRNADegradation: Analyze and correct probe positional bias in microarray data due to RNA degradation. doi:10.18129/B9.bioc.AffyRNADegradation, R package version 1.58.0, https://bioconductor.org/packages/AffyRNADegradation.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | AffyRNADegradation_1.58.0.tar.gz |
| Windows binary (x86_64) | AffyRNADegradation_1.58.0.zip |
| macOS binary (arm64) | AffyRNADegradation_1.58.0.tgz |
| macOS binary (x86_64) | AffyRNADegradation_1.58.0.tgz |