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phosphonormalizer

This is the released version of phosphonormalizer; for the devel version, see phosphonormalizer.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Compensates for the bias introduced by median normalization in

DOI: 10.18129/B9.bioc.phosphonormalizer

Bioconductor version: Release (3.23)

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

Author: Sohrab Saraei [aut, cre], Tomi Suomi [ctb], Otto Kauko [ctb], Laura Elo [ths]

Maintainer: Sohrab Saraei <sohrab.saraei at blueprintgenetics.com>

Citation (from within R, enter citation("phosphonormalizer")):

Sohrab Saraei. phosphonormalizer: Compensates for the bias introduced by median normalization in. doi:10.18129/B9.bioc.phosphonormalizer, R package version 1.36.0, https://bioconductor.org/packages/phosphonormalizer.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phosphonormalizer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phosphonormalizer")

Details

Package Archives

Follow Installation instructions to use this package in your R session.