pgen2gds
This is the development version of pgen2gds; to use it, please install the devel version of Bioconductor.
Format Conversion from PLINK2 PGEN to GDS
Bioconductor version: Development (3.24)
Provides functions to convert files from the PLINK2 pgen format to SeqArray GDS.
Author: Xiuwen Zheng [aut, cre]
Maintainer: Xiuwen Zheng <zhengx at u.washington.edu>
Citation (from within R, enter
citation("pgen2gds")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pgen2gds")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pgen2gds")| Format Conversion from PLINK2 PGEN to SeqArray GDS | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport, Genetics, Infrastructure, Software |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | GPL-3 + file LICENSE |
| Depends | methods, gdsfmt(>= 1.24.0) |
| Imports | SeqArray(>= 1.49.6), pgenlibr |
| System Requirements | |
| URL | https://github.com/zhengxwen/pgen2gds |
| Bug Reports | https://github.com/zhengxwen/pgen2gds/issues |
See More
| Suggests | parallel, digest, crayon, GenomicRanges, testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle, BiocGenerics |
| Linking To | gdsfmt |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pgen2gds_0.99.3.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | pgen2gds_0.99.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pgen2gds |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pgen2gds |
| Bioc Package Browser | https://code.bioconductor.org/browse/pgen2gds/ |
| Package Short Url | https://bioconductor.org/packages/pgen2gds/ |
| Package Downloads Report | Download Stats |