pdInfoBuilder
Platform Design Information Package Builder
Bioconductor version: 3.23 · Package version: 1.76.0
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pdInfoBuilder")Details
| Maintainer | Benilton Carvalho <benilton@unicamp.br> |
| Author | Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho |
| License | Artistic-2.0 |
| Downloads rank | 792 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, Infrastructure, Software |
Documentation
- Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
- PDInfo Package Building Affymetrix Mapping Chips
Download
Follow the installation instructions to use this package in your R session.
| Source package | pdInfoBuilder_1.76.0.tar.gz |
| Windows binary (x86_64) | pdInfoBuilder_1.76.0.zip |
| macOS binary (arm64) | pdInfoBuilder_1.76.0.tgz |
| macOS binary (x86_64) | pdInfoBuilder_1.76.0.tgz |
Dependencies
Depends: R (>= 3.2.0), methods, Biobase (>= 2.27.3), RSQLite (>= 1.0.0), affxparser (>= 1.39.4), oligo (>= 1.31.5)
Imports: Biostrings (>= 2.35.12), BiocGenerics (>= 0.13.11), DBI (>= 0.3.1), IRanges (>= 2.1.43), oligoClasses (>= 1.29.6), S4Vectors (>= 0.5.22)
Reverse dependencies
Suggests Me (3): aroma.affymetrix, maGUI, maqcExpression4plex