optimalFlow

This is the released version of optimalFlow; for the devel version, see optimalFlow.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

optimalFlow

Bioconductor version: Release (3.23)

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):

Hristo Inouzhe. optimalFlow: optimalFlow. doi:10.18129/B9.bioc.optimalFlow, R package version 1.24.0, https://bioconductor.org/packages/optimalFlow.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")

optimalFlow: optimal-transport approach to Flow Cytometry analysis	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FlowCytometry, Software, Technology
Version	1.24.0
In Bioconductor since	BioC 3.11 (R-4.0) (6.5 years)
License	Artistic-2.0
Depends	dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports	transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
System Requirements
URL

Suggests	knitr, BiocStyle, rmarkdown, magick
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	optimalFlow_1.24.0.tar.gz
Windows Binary (x86_64)	optimalFlow_1.24.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	optimalFlow_1.24.0.tgz
macOS Binary (sonoma-arm64)	optimalFlow_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/optimalFlow
Package Short Url	https://bioconductor.org/packages/optimalFlow/
Package Downloads Report	Download Stats