nullranges
This is the released version of nullranges; for the devel version, see nullranges.
All Bioconductor versions of nullranges
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14
Generation of null ranges via bootstrapping or covariate matching
Bioconductor version: 3.23 · Package version: 1.18.0
Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or sets of control ranges that are matched across one or more covariates. nullranges is designed to be inter-operable with other packages for analysis of genomic overlap enrichment, including the plyranges Bioconductor package.
Author: Michael Love [aut, cre] 
, Wancen Mu [aut] , Eric Davis [aut] , Douglas Phanstiel [aut] , Stuart Lee [aut] , Mikhail Dozmorov [ctb], Tim Triche [ctb], CZI [fnd]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation
From within R, enter citation("nullranges"):
Michael Love, Wancen Mu, Eric Davis, Douglas Phanstiel, Stuart Lee. nullranges: Generation of null ranges via bootstrapping or covariate matching. doi:10.18129/B9.bioc.nullranges, R package version 1.18.0, https://bioconductor.org/packages/nullranges.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nullranges")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.18.0 |
| License | GPL-3 |
| URL | https://nullranges.github.io/nullranges https://github.com/nullranges/nullranges |
| Bug Reports | https://support.bioconductor.org/tag/nullranges/ |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| Downloads rank | 922 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ATACSeq, Annotation, ChIPSeq, DNaseSeq, Epigenetics, FunctionalGenomics, GeneRegulation, GeneSetEnrichment, GeneTarget, GenomeAnnotation, GenomeWideAssociation, HiddenMarkovModel, HistoneModification, RNASeq, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/nullranges/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nullranges")| Introduction to nullranges | HTML | R Script |
| Introduction to bootRanges | HTML | R Script |
| Introduction to matchRanges | HTML | R Script |
| Matching case study I: CTCF occupancy | HTML | R Script |
| Matching case study II: CTCF orientation | HTML | R Script |
| Creating a pool set for matchRanges | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | nullranges_1.18.0.tar.gz |
| Windows binary (x86_64) | nullranges_1.18.0.zip |
| macOS binary (arm64) | nullranges_1.18.0.tgz |
| macOS binary (x86_64) | nullranges_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/nullranges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nullranges |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.2.0)
Imports: stats, IRanges, GenomicRanges, Seqinfo, methods, rlang, S4Vectors, scales, InteractionSet, ggplot2, grDevices, plyranges, data.table, progress, ggridges
Suggests: testthat, knitr, rmarkdown, ks, DNAcopy, RcppHMM, AnnotationHub, ExperimentHub, GenomeInfoDb, nullrangesData, ensembldb, EnsDb.Hsapiens.v86, BSgenome.Hsapiens.UCSC.hg38, patchwork, plotgardener, dplyr, magrittr, tidyr, cobalt, DiagrammeR, MatchIt, mariner
Reverse dependencies
Suggests Me (1): tidyomics