muscData

This is the released version of muscData; for the devel version, see muscData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Multi-sample multi-group scRNA-seq data

Bioconductor version: Release (3.23)

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>

Citation (from within R, enter citation("muscData")):

Helena L. Crowell. muscData: Multi-sample multi-group scRNA-seq data. doi:10.18129/B9.bioc.muscData, R package version 1.26.0, https://bioconductor.org/packages/muscData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muscData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscData")

Multi-sample multi-group scRNA-seq data	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData
Version	1.26.0
In Bioconductor since	BioC 3.10 (R-3.6) (7 years)
License	MIT + file LICENSE
Depends	R (>= 3.6), ExperimentHub, SingleCellExperiment
Imports	utils
System Requirements
URL	https://github.com/HelenaLC/muscData
Bug Reports	https://github.com/HelenaLC/muscData/issues

Suggests	BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	dreamlet, glmGamPoi
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	muscData_1.26.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/muscData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/muscData
Package Short Url	https://bioconductor.org/packages/muscData/
Package Downloads Report	Download Stats