msqc1

This is the released version of msqc1; for the devel version, see msqc1.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Sigma mix MSQC1 data

Bioconductor version: Release (3.23)

contains eight technical replicate data set and a three replicate dilution series of the MS Qual/Quant Quality Control Mix standard sample (Sigma-Aldrich, Buchs, Switzerland) measured on five different mass spectrometer platforms at the Functional Genomics Center Zurich.

Author: Tobias Kockmann [aut] ORCID: 0000-0002-1847-885X , Christian Trachsel [aut], Christian Panse [aut, cre] ORCID: 0000-0003-1975-3064

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("msqc1")):

Tobias Kockmann, Christian Trachsel, Christian Panse. msqc1: Sigma mix MSQC1 data. doi:10.18129/B9.bioc.msqc1, R package version 1.40.0, https://bioconductor.org/packages/msqc1.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msqc1")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msqc1")

ASMS 2016 poster (in portrait) abstract ID number: 282492	PDF	R Script
LC Observations - Retention Time Stability	HTML	R Script
Introducing msqc1 - A Mass Spec Data set for Targeted Proteomics Performance Evaluation	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, MassSpectrometryData, ReproducibleResearch
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL
Depends	R (>= 3.6), lattice, stats, utils
Imports
System Requirements
URL	https://panoramaweb.org/labkey/MSQC1.url http://fgcz-bfabric.uzh.ch/bfabric/project.html?projectId=1959

Suggests	BiocStyle, knitr, rmarkdown, testthat, specL (>= 1.2)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	CalibraCurve
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	msqc1_1.40.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/msqc1
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/msqc1
Package Short Url	https://bioconductor.org/packages/msqc1/
Package Downloads Report	Download Stats