miaTime
This is the development version of miaTime; to use it, please install the devel version of Bioconductor.
Microbiome Time Series Analysis
Bioconductor version: Development (3.22)
The `miaTime` package provides tools for microbiome time series analysis based on (Tree)SummarizedExperiment infrastructure.
Author: Leo Lahti [aut]
, Tuomas Borman [aut, cre]
, Yagmur Simsek [aut], Sudarshan Shetty [ctb], Chouaib Benchraka [ctb], Muluh Muluh [ctb]
Maintainer: Tuomas Borman <tuomas.v.borman at utu.fi>
citation("miaTime")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miaTime")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaTime")| miaTime | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Microbiome, Sequencing, Software |
| Version | 0.99.9 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 4.5.0), mia |
| Imports | dplyr, methods, S4Vectors, SingleCellExperiment, stats, SummarizedExperiment, tidyr, TreeSummarizedExperiment |
| System Requirements | |
| URL | https://github.com/microbiome/miaTime |
| Bug Reports | https://github.com/microbiome/miaTime/issues |
See More
| Suggests | BiocStyle, devtools, ggplot2, knitr, lubridate, miaViz, rmarkdown, scater, testthat, vegan |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miaTime_0.99.9.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | miaTime_0.99.9.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miaTime |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miaTime |
| Bioc Package Browser | https://code.bioconductor.org/browse/miaTime/ |
| Package Short Url | https://bioconductor.org/packages/miaTime/ |
| Package Downloads Report | Download Stats |