methylInheritance
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Bioconductor version: 3.23 · Package version: 1.36.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methylInheritance")Details
| Maintainer | Astrid Deschênes <adeschen@hotmail.com> |
| Author | Astrid Deschênes [cre, aut] (ORCID: <https://orcid.org/0000-0001-7846-6749>), Pascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>), Arnaud Droit [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/adeschen/methylInheritance |
| Bug Reports | https://github.com/adeschen/methylInheritance/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome |
| Package Short Url | https://bioconductor.org/packages/methylInheritance/ |
Citation
From within R, enter citation("methylInheritance"):
Astrid Deschênes, Pascal Belleau, Arnaud Droit. methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect. doi:10.18129/B9.bioc.methylInheritance, R package version 1.36.0, https://bioconductor.org/packages/methylInheritance.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | methylInheritance_1.36.0.tar.gz |
| Windows binary (x86_64) | methylInheritance_1.36.0.zip |
| macOS binary (arm64) | methylInheritance_1.36.0.tgz |
| macOS binary (x86_64) | methylInheritance_1.36.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus
Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim, testthat (>= 3.0.0)
Reverse dependencies
Suggests Me (1): methInheritSim