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mBPCR

This is the released version of mBPCR; for the devel version, see mBPCR.

All versions

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Bayesian Piecewise Constant Regression for DNA copy number estimation

DOI: 10.18129/B9.bioc.mBPCR

Bioconductor version: Release (3.23)

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

P.M.V. Rancoita, with contributions from M. Hutter. mBPCR: Bayesian Piecewise Constant Regression for DNA copy number estimation. doi:10.18129/B9.bioc.mBPCR, R package version 1.66.0, https://bioconductor.org/packages/mBPCR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")

Details

Package Archives

Follow Installation instructions to use this package in your R session.