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loci2path

This is the released version of loci2path; for the devel version, see loci2path.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

DOI: 10.18129/B9.bioc.loci2path

Bioconductor version: Release (3.23)

loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.

Author: Tianlei Xu

Maintainer: Tianlei Xu <tianlei.xu at emory.edu>

Citation (from within R, enter citation("loci2path")):

Tianlei Xu. loci2path: Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs. doi:10.18129/B9.bioc.loci2path, R package version 1.32.0, https://bioconductor.org/packages/loci2path.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("loci2path")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("loci2path")

Details

Package Archives

Follow Installation instructions to use this package in your R session.