lcmsPlot
This is the development version of lcmsPlot; to use it, please install the devel version of Bioconductor.
Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package
Bioconductor version: Development (3.23)
lcmsPlot is an R package designed for visualising Liquid Chromatography-Mass Spectrometry (LC-MS) data with publication-ready high-quality plots. The package enables users to generate and customise chromatograms, mass traces, spectra, and more with fine-tuned aesthetics and annotation options.
Author: Ossama Edbali [aut, cre]
, Ralf Johannes Maria Weber [aut]
Maintainer: Ossama Edbali <o.edbali at bham.ac.uk>
citation("lcmsPlot")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("lcmsPlot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lcmsPlot")| Creating publication-ready LC-MS data plots | HTML | R Script |
| Easy-to-use, intuitive, and efficient LC-MS data plotting with lcmsPlot | HTML | R Script |
| Reference Manual |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 0.99.16 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | GPL-3 |
| Depends | R (>= 4.4.0) |
| Imports | methods, rlang, dplyr, tidyr, BiocParallel, MSnbase, xcms, MsExperiment, mzR, Spectra, MsBackendMsp, S4Vectors, ggplot2, scales, patchwork, DBI, RSQLite |
| System Requirements | |
| URL | https://github.com/computational-metabolomics/lcmsPlot |
| Bug Reports | https://github.com/computational-metabolomics/lcmsPlot/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, openxlsx, faahKO, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | lcmsPlot_0.99.16.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/lcmsPlot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/lcmsPlot |
| Bioc Package Browser | https://code.bioconductor.org/browse/lcmsPlot/ |
| Package Short Url | https://bioconductor.org/packages/lcmsPlot/ |
| Package Downloads Report | Download Stats |