iSEEu
iSEE Universe
Bioconductor version: 3.23 · Package version: 1.24.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEu")Details
| Maintainer | Kevin Rue-Albrecht <kevinrue67@gmail.com> |
| Author | Kevin Rue-Albrecht [aut, cre] (ORCID: <https://orcid.org/0000-0003-3899-3872>), Charlotte Soneson [aut] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>), Michael Stadler [ctb] |
| License | MIT + file LICENSE |
| URL | https://github.com/iSEE/iSEEu |
| Bug Reports | https://github.com/iSEE/iSEEu/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Package Short Url | https://bioconductor.org/packages/iSEEu/ |
Citation
From within R, enter citation("iSEEu"):
Kevin Rue-Albrecht, Charlotte Soneson, Federico Marini, Aaron Lun. iSEEu: iSEE Universe. doi:10.18129/B9.bioc.iSEEu, R package version 1.24.0, https://bioconductor.org/packages/iSEEu.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | iSEEu_1.24.0.tar.gz |
| Windows binary (x86_64) | iSEEu_1.24.0.zip |
| macOS binary (arm64) | iSEEu_1.24.0.tgz |
| macOS binary (x86_64) | iSEEu_1.24.0.tgz |
Dependencies
Imports: methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce
Suggests: scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
Reverse dependencies
Imports Me (1): iSEEfier