iSEEid
This is the development version of iSEEid; to use it, please install the devel version of Bioconductor.
iSEE extension to assist in identifying sets of samples/cells
Bioconductor version: Development (3.24)
This package provides a dedicated panel to assist the sample identification within a single iSEE web-application. The main functionality of this package can be adopted to efficiently select samples (e.g. cells) that need to be identified and annotated in the analysis workflow. With iSEEid, the iSEE framework fully qualifies to be an ideal companion for assigning appropriate labels to large omics datasets.
Author: Federico Marini [aut, cre]
, Kevin Rue-Albrecht [aut]
, Charlotte Soneson [aut]
Maintainer: Federico Marini <marinif at uni-mainz.de>
citation("iSEEid")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("iSEEid")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEid")| Introduction to iSEEid | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, ShinyApps, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Version | 0.99.1 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | iSEE, SummarizedExperiment |
| Imports | methods, shiny, shinyAce |
| System Requirements | |
| URL | https://github.com/iSEE/iSEEid |
| Bug Reports | https://github.com/iSEE/iSEEid/issues |
See More
| Suggests | scRNAseq, scater, knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), scrapper |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iSEEid_0.99.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | iSEEid_0.99.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEid |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEid |
| Bioc Package Browser | https://code.bioconductor.org/browse/iSEEid/ |
| Package Short Url | https://bioconductor.org/packages/iSEEid/ |
| Package Downloads Report | Download Stats |