iModMix
This is the development version of iModMix; to use it, please install the devel version of Bioconductor.
Integrative Modules for Multi-Omics Data
Bioconductor version: Development (3.22)
The iModMix network-based method offers an integrated framework for analyzing multi-omics data, including metabolomics, proteomics, and transcriptomics data, enabling the exploration of intricate molecular associations within heterogeneous biological systems.
Author: Isis Narvaez-Bandera [aut, cre]
Maintainer: Isis Narvaez-Bandera <isis.narvaez at upr.edu>
citation("iModMix")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("iModMix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iModMix")| Publication-ready integration omics data including unidentified metabolites | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GeneExpression, Metabolomics, Network, PrincipalComponent, Proteomics, Software, Transcriptomics, Visualization |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | GPL-3 |
| Depends | R (>= 4.5.0) |
| Imports | config (>= 0.3.2), golem (>= 0.4.1), shiny (>= 1.7.5), ComplexHeatmap, DT, RColorBrewer, WGCNA, corrplot, cowplot, dynamicTreeCut, ggplot2, glassoFast, impute, purrr, stringr, tidyr, visNetwork, shinyBS, httr, dplyr, stats, iModMixData, SummarizedExperiment, ExperimentHub(>= 2.99.0) |
| System Requirements | |
| URL | https://github.com/biodatalab/iModMix |
| Bug Reports | https://github.com/biodatalab/iModMix/issues |
See More
| Suggests | testthat (>= 3.0.0), ggfortify, shinyWidgets, pROC, tuneR, knitr, curl, readxl, reshape2, vroom, here, enrichR, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iModMix_0.99.3.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | iModMix_0.99.3.tgz |
| macOS Binary (arm64) | iModMix_0.99.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iModMix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iModMix |
| Bioc Package Browser | https://code.bioconductor.org/browse/iModMix/ |
| Package Short Url | https://bioconductor.org/packages/iModMix/ |
| Package Downloads Report | Download Stats |