gscreend
This is the released version of gscreend; for the devel version, see gscreend.
All Bioconductor versions of gscreend
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10
Analysis of pooled genetic screens
Bioconductor version: 3.23 · Package version: 1.26.0
Package for the analysis of pooled genetic screens (e.g. CRISPR-KO). The analysis of such screens is based on the comparison of gRNA abundances before and after a cell proliferation phase. The gscreend packages takes gRNA counts as input and allows detection of genes whose knockout decreases or increases cell proliferation.
Author: Katharina Imkeller [cre, aut], Wolfgang Huber [aut]
Maintainer: Katharina Imkeller <k.imkeller at dkfz.de>
Citation
From within R, enter citation("gscreend"):
Katharina Imkeller, Wolfgang Huber. gscreend: Analysis of pooled genetic screens. doi:10.18129/B9.bioc.gscreend, R package version 1.26.0, https://bioconductor.org/packages/gscreend.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gscreend")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.26.0 |
| License | GPL-3 |
| URL | https://github.com/imkeller/gscreend |
| Bug Reports | https://github.com/imkeller/gscreend/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| Downloads rank | 1399 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CRISPR, PooledScreens, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/gscreend/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gscreend")| Vignette illustrating the usage of gscreend on simulated data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | gscreend_1.26.0.tar.gz |
| Windows binary (x86_64) | gscreend_1.26.0.zip |
| macOS binary (arm64) | gscreend_1.26.0.tgz |
| macOS binary (x86_64) | gscreend_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gscreend |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gscreend |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.6)
Imports: SummarizedExperiment, nloptr, fGarch, methods, BiocParallel, graphics