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frenchFISH

This is the released version of frenchFISH; for the devel version, see frenchFISH.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections

DOI: 10.18129/B9.bioc.frenchFISH

Bioconductor version: Release (3.23)

FrenchFISH comprises a nuclear volume correction method coupled with two types of Poisson models: either a Poisson model for improved manual spot counting without the need for control probes; or a homogenous Poisson Point Process model for automated spot counting.

Author: Adam Berman, Geoff Macintyre

Maintainer: Adam Berman <agb61 at cam.ac.uk>

Citation (from within R, enter citation("frenchFISH")):

Adam Berman, Geoff Macintyre. frenchFISH: Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections. doi:10.18129/B9.bioc.frenchFISH, R package version 1.24.0, https://bioconductor.org/packages/frenchFISH.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("frenchFISH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("frenchFISH")

Details

Package Archives

Follow Installation instructions to use this package in your R session.