ewceData

This is the released version of ewceData; for the devel version, see ewceData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

The ewceData package provides reference data required for ewce

Bioconductor version: Release (3.23)

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Author: Alan Murphy [aut] ORCID: 0000-0002-2487-8753 , Hiranyamaya Dash [cre] ORCID: 0009-0005-5514-505X , Nathan Skene [aut] ORCID: 0000-0002-6807-3180

Maintainer: Hiranyamaya Dash <hdash.work at gmail.com>

Citation (from within R, enter citation("ewceData")):

Alan Murphy, Nathan Skene. ewceData: The ewceData package provides reference data required for ewce. doi:10.18129/B9.bioc.ewceData, R package version 1.20.0, https://bioconductor.org/packages/ewceData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ewceData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ewceData")

Data package for Expression Weighted Celltype Enrichment EWCE	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Genome, MicroarrayData, Proteome, RNASeqData, SequencingData, SingleCellData
Version	1.20.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	Artistic-2.0
Depends	R (>= 4.1), ExperimentHub
Imports
System Requirements
URL	https://github.com/neurogenomics/ewceData

Suggests	knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown, rbibutils, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me	EWCE
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ewceData_1.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ewceData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ewceData
Package Short Url	https://bioconductor.org/packages/ewceData/
Package Downloads Report	Download Stats