epimutacionsData

This is the released version of epimutacionsData; for the devel version, see epimutacionsData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15

Data for epimutacions package

Bioconductor version: Release (3.23)

This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.

Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]

Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>

Citation (from within R, enter citation("epimutacionsData")):

Leire Abarrategui, Juan R. Gonzalez, Carlos Ruiz-Arenas, Carles Hernandez-Ferrer. epimutacionsData: Data for epimutacions package. doi:10.18129/B9.bioc.epimutacionsData, R package version 1.16.0, https://bioconductor.org/packages/epimutacionsData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epimutacionsData")

data repository for epimutacions package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.16.0
In Bioconductor since	BioC 3.15 (R-4.2) (4.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.2.0)
Imports
System Requirements
URL	https://github.com/LeireAbarrategui/epimutacionsData
Bug Reports	https://github.com/LeireAbarrategui/epimutacionsData/issues

Suggests	rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
Linking To
Enhances
Depends On Me	epimutacions
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epimutacionsData_1.16.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/epimutacionsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epimutacionsData
Package Short Url	https://bioconductor.org/packages/epimutacionsData/
Package Downloads Report	Download Stats