dupRadar
Assessment of duplication rates in RNA-Seq datasets
Bioconductor version: Release (3.20)
Duplication rate quality control for RNA-Seq datasets.
Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>
Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>
Citation (from within R, enter
citation("dupRadar")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dupRadar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dupRadar")
Using dupRadar | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology |
Version | 1.36.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
License | GPL-3 |
Depends | R (>= 3.2.0) |
Imports | Rsubread(>= 1.14.1), KernSmooth |
System Requirements | |
URL | https://www.bioconductor.org/packages/dupRadar https://ssayols.github.io/dupRadar/index.html |
See More
Suggests | BiocStyle, knitr, rmarkdown, AnnotationHub |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | dupRadar_1.36.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | dupRadar_1.36.0.tgz |
macOS Binary (arm64) | dupRadar_1.36.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/dupRadar |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dupRadar |
Bioc Package Browser | https://code.bioconductor.org/browse/dupRadar/ |
Package Short Url | https://bioconductor.org/packages/dupRadar/ |
Package Downloads Report | Download Stats |