rigvf
This is the development version of rigvf; for the stable release version, see rigvf.
All Bioconductor versions of rigvf
3.24 (devel), 3.23 (release), 3.22, 3.21
R interface to the IGVF Catalog
Bioconductor version: 3.24 · Package version: 1.5.3
The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.
Author: Martin Morgan [aut] 
, Michael Love [aut, cre] , NIH NHGRI UM1HG012003 [fnd]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation
From within R, enter citation("rigvf"):
Martin Morgan, Michael Love. rigvf: R interface to the IGVF Catalog. doi:10.18129/B9.bioc.rigvf, R package version 1.5.3, https://bioconductor.org/packages/rigvf.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("rigvf")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.5.3 |
| License | MIT + file LICENSE |
| URL | https://IGVF.github.io/rigvf |
| Bug Reports | https://github.com/IGVF/rigvf/issues |
| Last updated | 2026-08-19 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1 year) |
| Downloads rank | 2322 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, FunctionalGenomics, GeneRegulation, GeneTarget, GenomicVariation, Software, ThirdPartyClient, VariantAnnotation |
| Package Short Url | https://bioconductor.org/packages/rigvf/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rigvf")| Accessing data from the IGVF Catalog | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | rigvf_1.5.3.tar.gz |
| Windows binary (x86_64) | rigvf_1.5.3.zip |
| macOS binary (arm64) | rigvf_1.5.3.tgz |
| macOS binary (x86_64) | rigvf_1.5.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rigvf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rigvf |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.1.0)
Imports: methods, httr2, rjsoncons, dplyr, tidyr, rlang, memoise, cachem, whisker, jsonlite, GenomicRanges, IRanges, Seqinfo
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), plyranges, plotgardener, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, tibble