simpIntLists
This is the development version of simpIntLists; for the stable release version, see simpIntLists.
The package contains BioGRID interactions for various organisms in a simple format
Bioconductor version: Development (3.20)
The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
citation("simpIntLists")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("simpIntLists")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simpIntLists")
simpIntLists | R Script | |
Reference Manual |
Details
biocViews | Arabidopsis_thaliana_Data, ExperimentData |
Version | 1.41.0 |
License | GPL (>= 2) |
Depends | |
Imports | |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | ibh |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | simpIntLists_1.41.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/simpIntLists |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/simpIntLists |
Package Short Url | https://bioconductor.org/packages/simpIntLists/ |
Package Downloads Report | Download Stats |