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prebsdata

This is the development version of prebsdata; for the stable release version, see prebsdata.

Data for 'prebs' package


Bioconductor version: Development (3.19)

This package contains data required to run examples in 'prebs' package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp) 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie)

Author: Karolis Uziela and Antti Honkela

Maintainer: Karolis Uziela <karolis.uziela at scilifelab.se>

Citation (from within R, enter citation("prebsdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("prebsdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("prebsdata")
prebsdata User Guide PDF
Reference Manual PDF

Details

biocViews ExperimentData, RNASeqData, SequencingData
Version 1.39.0
License Artistic-2.0
Depends R (>= 2.14.0)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me prebs, SigFuge
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package prebsdata_1.39.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/prebsdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/prebsdata
Package Short Url https://bioconductor.org/packages/prebsdata/
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