mcsurvdata

This is the development version of mcsurvdata; for the stable release version, see mcsurvdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Meta cohort survival data

Bioconductor version: Development (3.24)

This package stores two merged expressionSet objects that contain the gene expression profile and clinical information of -a- six breast cancer cohorts and -b- four colorectal cancer cohorts. Breast cancer data are employed in the vignette of the hrunbiased package for survival analysis of gene signatures.

Author: Adria Caballe Mestres [aut, cre], Antoni Berenguer Llergo [aut], Camille Stephan-Otto Attolini [aut]

Maintainer: Adria Caballe Mestres <adria.caballe at irbbarcelona.org>

Citation (from within R, enter citation("mcsurvdata")):

Adria Caballe Mestres, Antoni Berenguer Llergo, Camille Stephan-Otto Attolini. mcsurvdata: Meta cohort survival data. doi:10.18129/B9.bioc.mcsurvdata, R package version 1.31.0, https://bioconductor.org/packages/mcsurvdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("mcsurvdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mcsurvdata")

analysis vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, GEO, Homo_sapiens_Data, MicroarrayData
Version	1.31.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL (>=2)
Depends	R (>= 3.5), ExperimentHub
Imports	AnnotationHub, Biobase
System Requirements
URL	https://github.com/adricaba/mcsurvdata

Suggests	BiocStyle, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mcsurvdata_1.31.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/mcsurvdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mcsurvdata
Package Short Url	https://bioconductor.org/packages/mcsurvdata/
Package Downloads Report	Download Stats