• Home
• Bioconductor 3.24
• Experiment Packages
• EMTscoreData (development version)

EMTscoreData

This is the development version of EMTscoreData; for the stable release version, see EMTscoreData.

All versions

3.24 (devel), 3.23 (release)

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

DOI: 10.18129/B9.bioc.EMTscoreData

Bioconductor version: Development (3.24)

Provides 12 single-cell RNA-seq datasets profiling epithelial–mesenchymal transition (EMT) in human cancer cell lines (MCF7, OVCA420, DU145, and A549) under TGF-beta stimulation, kinase inhibition, and time-course conditions, as reported by Cook DP and Vanderhyden BC (2020). The datasets are distributed via ExperimentHub as SingleCellExperiment objects.

Author: Haimei Wen [aut, cre] ORCID: 0009-0006-1600-1210 , Tian Hong [fnd]

Maintainer: Haimei Wen <hudie.luoluo at gmail.com>

Citation (from within R, enter citation("EMTscoreData")):

Haimei Wen. EMTscoreData: Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020). doi:10.18129/B9.bioc.EMTscoreData, R package version 1.1.0, https://bioconductor.org/packages/EMTscoreData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("EMTscoreData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EMTscoreData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.