Welcome to the new bioconductor.org!

CopyhelpeR

This is the development version of CopyhelpeR; for the stable release version, see CopyhelpeR.

Helper files for CopywriteR


Bioconductor version: Development (3.19)

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")
CopyhelpeR PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, GenomicSequence, Homo_sapiens
Version 1.35.0
License GPL-2
Depends R (>= 3.5.0)
Imports
System Requirements
URL
See More
Suggests BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CopyhelpeR_1.35.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CopyhelpeR
Package Short Url https://bioconductor.org/packages/CopyhelpeR/
Package Downloads Report Download Stats