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XtraSNPlocs.Hsapiens.dbSNP144.GRCh37

This is the development version of XtraSNPlocs.Hsapiens.dbSNP144.GRCh37; for the stable release version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Extra SNP locations for Homo sapiens (dbSNP Build 144)


Bioconductor version: Development (3.24)

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")):

Herve Pages. XtraSNPlocs.Hsapiens.dbSNP144.GRCh37: Extra SNP locations for Homo sapiens (dbSNP Build 144). doi:10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, R package version 0.99.12, https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF
Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version0.99.12
In Bioconductor sinceBioC 3.1 (R-3.2) (11.5 years)
License Artistic-2.0
Depends R (>= 2.10), BSgenome
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
System Requirements
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Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz
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macOS Binary (sonoma-arm64)
Package Short Url https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37/
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