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AHEnsDbs

This is the development version of AHEnsDbs; for the stable release version, see AHEnsDbs.

EnsDbs for AnnotationHub


Bioconductor version: Development (3.20)

Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the ensembldb package employing the Ensembl Perl API.

Author: Johannes Rainer

Maintainer: Johannes Rainer <johannes.rainer at eurac.edu>

Citation (from within R, enter citation("AHEnsDbs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AHEnsDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHEnsDbs")
Provide EnsDb databases for AnnotationHub HTML R Script
Reference Manual PDF

Details

biocViews AnnotationData, AnnotationHubSoftware, Coverage, DataImport, Sequencing
Version 1.3.1
License Artistic-2.0
Depends R (>= 3.4), methods, ensembldb(>= 1.99.10)
Imports AnnotationHubData(>= 1.5.24)
System Requirements
URL
See More
Suggests BiocStyle, knitr, AnnotationHub(>= 2.7.13), rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHEnsDbs_1.3.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/AHEnsDbs/
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