snifter
This is the development version of snifter; for the stable release version, see snifter.
R wrapper for the python openTSNE library
Bioconductor version: Development (3.24)
Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) <doi:10.1101/731877> and the algorithm described by Linderman et al. (2018) <doi:10.1038/s41592-018-0308-4>.
Author: Alan O'Callaghan [aut, cre], Aaron Lun [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>
citation("snifter")):Alan O'Callaghan, Aaron Lun. snifter: R wrapper for the python openTSNE library. doi:10.18129/B9.bioc.snifter, R package version 1.23.0, https://bioconductor.org/packages/snifter.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("snifter")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snifter")| Introduction to snifter | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, Sequencing, SingleCell, Software, Visualization |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (6 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0) |
| Imports | basilisk, reticulate, irlba, stats, assertthat |
| System Requirements | |
| URL | https://bioconductor.org/packages/snifter |
| Bug Reports | https://github.com/Alanocallaghan/snifter/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.advanced |
| Imports Me | |
| Suggests Me | scater, sketchR |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | snifter_1.23.0.tar.gz |
| Windows Binary (x86_64) | snifter_1.23.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | snifter_1.23.0.tgz |
| macOS Binary (sonoma-arm64) | snifter_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/snifter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/snifter |
| Package Short Url | https://bioconductor.org/packages/snifter/ |
| Package Downloads Report | Download Stats |