similaRpeak
This is the development version of similaRpeak; for the stable release version, see similaRpeak.
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Bioconductor version: Development (3.20)
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
Author: Astrid DeschĂȘnes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid DeschĂȘnes <adeschen at hotmail.com>
citation("similaRpeak")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("similaRpeak")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("similaRpeak")
Similarity between two ChIP-Seq profiles | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software |
Version | 1.37.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | Artistic-2.0 |
Depends | R6 (>= 2.0) |
Imports | stats |
System Requirements | |
URL | https://github.com/adeschen/similaRpeak |
Bug Reports | https://github.com/adeschen/similaRpeak/issues |
See More
Suggests | RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | similaRpeak_1.37.0.tar.gz |
Windows Binary | similaRpeak_1.37.0.zip |
macOS Binary (x86_64) | similaRpeak_1.37.0.tgz |
macOS Binary (arm64) | similaRpeak_1.37.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/similaRpeak |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/similaRpeak |
Bioc Package Browser | https://code.bioconductor.org/browse/similaRpeak/ |
Package Short Url | https://bioconductor.org/packages/similaRpeak/ |
Package Downloads Report | Download Stats |