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riboSeqR

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of riboSeqR; for the stable release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments


Bioconductor version: Development (3.19)

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("riboSeqR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Genetics, RiboSeq, Sequencing, Software, Visualization
Version 1.37.1
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.0.2), methods, GenomicRanges, abind
Imports Rsamtools, IRanges, baySeq, GenomeInfoDb, seqLogo
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Suggests BiocStyle, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/riboSeqR
Package Short Url https://bioconductor.org/packages/riboSeqR/
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