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phantasusLite

This is the development version of phantasusLite; for the stable release version, see phantasusLite.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

Loading and annotation RNA-seq counts matrices

DOI: 10.18129/B9.bioc.phantasusLite

Bioconductor version: Development (3.24)

PhantasusLite – a lightweight package with helper functions of general interest extracted from phantasus package. In parituclar it simplifies working with public RNA-seq datasets from GEO by providing access to the remote HSDS repository with the precomputed gene counts from ARCHS4 and DEE2 projects.

Author: Rita Sablina [aut], Maxim Kleverov [aut], Alexey Sergushichev [aut, cre]

Maintainer: Alexey Sergushichev <alsergbox at gmail.com>

Citation (from within R, enter citation("phantasusLite")):

Rita Sablina, Maxim Kleverov, Alexey Sergushichev. phantasusLite: Loading and annotation RNA-seq counts matrices. doi:10.18129/B9.bioc.phantasusLite, R package version 1.11.4, https://bioconductor.org/packages/phantasusLite.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("phantasusLite")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phantasusLite")

Details

Package Archives

Follow Installation instructions to use this package in your R session.