mpra
This is the development version of mpra; for the stable release version, see mpra.
Analyze massively parallel reporter assays
Bioconductor version: Development (3.20)
Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
Author: Leslie Myint [cre, aut], Kasper D. Hansen [aut]
Maintainer: Leslie Myint <leslie.myint at gmail.com>
Citation (from within R, enter
citation("mpra")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mpra")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mpra")
mpra User's Guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | FunctionalGenomics, GeneRegulation, Sequencing, Software |
Version | 1.27.3 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), methods, BiocGenerics, SummarizedExperiment, limma |
Imports | S4Vectors, scales, stats, graphics, statmod |
System Requirements | |
URL | https://github.com/hansenlab/mpra |
Bug Reports | https://github.com/hansenlab/mpra/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, RUnit |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | mpra_1.27.3.tar.gz |
Windows Binary (x86_64) | mpra_1.27.3.zip |
macOS Binary (x86_64) | mpra_1.27.3.tgz |
macOS Binary (arm64) | mpra_1.27.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/mpra |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mpra |
Bioc Package Browser | https://code.bioconductor.org/browse/mpra/ |
Package Short Url | https://bioconductor.org/packages/mpra/ |
Package Downloads Report | Download Stats |