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kissDE

This is the development version of kissDE; for the stable release version, see kissDE.

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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Retrieves Condition-Specific Variants in RNA-Seq Data

DOI: 10.18129/B9.bioc.kissDE

Bioconductor version: Development (3.24)

Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.

Author: Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurelie Siberchicot [aut, cre] ORCID: 0000-0002-7638-8318 , Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb]

Maintainer: Aurelie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>

Citation (from within R, enter citation("kissDE")):

Clara Benoit-Pilven, Camille Marchet, Janice Kielbassa, Lilia Brinza, Audric Cologne, Aurelie Siberchicot, Vincent Lacroix. kissDE: Retrieves Condition-Specific Variants in RNA-Seq Data. doi:10.18129/B9.bioc.kissDE, R package version 1.33.0, https://bioconductor.org/packages/kissDE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("kissDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("kissDE")

Details

Package Archives

Follow Installation instructions to use this package in your R session.