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igvShiny

This is the development version of igvShiny; to use it, please install the devel version of Bioconductor.

igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)


Bioconductor version: Development (3.19)

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

Author: Paul Shannon [aut], Arkadiusz Gladki [aut, cre] , Karolina Scigocka [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("igvShiny")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("igvShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Coverage, Sequencing, ShinyApps, Software
Version 0.99.5
In Bioconductor since BioC 3.19 (R-4.4)
License MIT + file LICENSE
Depends GenomicRanges, methods, shiny
Imports BiocGenerics, checkmate, futile.logger, GenomeInfoDbData, htmlwidgets, httr, jsonlite, randomcoloR, RCurl, utils
System Requirements
URL https://github.com/gladkia/igvShiny https://gladkia.github.io/igvShiny/
Bug Reports https://github.com/gladkia/igvShiny/issues
See More
Suggests BiocStyle, GenomicAlignments, knitr, Rsamtools, rtracklayer, RUnit, shinytest2, VariantAnnotation
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/igvShiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/igvShiny
Package Short Url https://bioconductor.org/packages/igvShiny/
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