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ggseqalign

This is the development version of ggseqalign; for the stable release version, see ggseqalign.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20

Minimal Visualization of Sequence Alignments

DOI: 10.18129/B9.bioc.ggseqalign

Bioconductor version: Development (3.24)

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Author: Simeon Lim Rossmann [aut, cre] ORCID: 0000-0003-0435-8221

Maintainer: Simeon Lim Rossmann <simeon.rossmann at nmbu.no>

Citation (from within R, enter citation("ggseqalign")):

Simeon Lim Rossmann. ggseqalign: Minimal Visualization of Sequence Alignments. doi:10.18129/B9.bioc.ggseqalign, R package version 1.7.0, https://bioconductor.org/packages/ggseqalign.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ggseqalign")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggseqalign")

Details

Package Archives

Follow Installation instructions to use this package in your R session.