ggseqalign

This is the development version of ggseqalign; to use it, please install the devel version of Bioconductor.

Minimal Visualization of Sequence Alignments


Bioconductor version: Development (3.20)

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Author: Simeon Lim Rossmann [aut, cre]

Maintainer: Simeon Lim Rossmann <simeon.rossmann at nmbu.no>

Citation (from within R, enter citation("ggseqalign")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ggseqalign")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggseqalign")
Quickstart Guide to ggseqalign HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, MultipleSequenceAlignment, Software, Visualization
Version 0.99.1
In Bioconductor since BioC 3.20 (R-4.4)
License Artistic-2.0
Depends R (>= 4.4.0)
Imports pwalign, dplyr, ggplot2
System Requirements
URL https://github.com/simeross/ggseqalign
Bug Reports https://github.com/simeross/ggseqalign/issues
See More
Suggests Biostrings, BiocStyle, knitr, rmarkdown
Linking To
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggseqalign_0.99.1.tar.gz
Windows Binary ggseqalign_0.99.1.zip (64-bit only)
macOS Binary (x86_64) ggseqalign_0.99.1.tgz
macOS Binary (arm64) ggseqalign_0.99.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggseqalign
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggseqalign
Bioc Package Browser https://code.bioconductor.org/browse/ggseqalign/
Package Short Url https://bioconductor.org/packages/ggseqalign/
Package Downloads Report Download Stats