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flowStats

This is the development version of flowStats; for the stable release version, see flowStats.

Statistical methods for the analysis of flow cytometry data


Bioconductor version: Development (3.19)

Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee

Maintainer: Greg Finak <greg at ozette.com>, Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("flowStats")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowStats")
flowStats Overview PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version 4.15.1
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License Artistic-2.0
Depends R (>= 3.0.2)
Imports BiocGenerics, MASS, flowCore(>= 1.99.6), flowWorkspace, ncdfFlow(>= 2.19.5), flowViz, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, cluster, utils, KernSmooth, lattice, ks, RColorBrewer, rrcov, corpcor, mnormt, clue
System Requirements
URL http://www.github.com/RGLab/flowStats
Bug Reports http://www.github.com/RGLab/flowStats/issues
See More
Suggests xtable, testthat, openCyto, ggcyto, ggridges
Linking To
Enhances RBGL, graph
Depends On Me flowVS, highthroughputassays
Imports Me
Suggests Me cydar, flowClust, flowCore, flowTime, flowViz, ggcyto, ncdfFlow, openCyto
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowStats_4.15.1.tar.gz
Windows Binary flowStats_4.15.1.zip (64-bit only)
macOS Binary (x86_64) flowStats_4.15.1.tgz
macOS Binary (arm64) flowStats_4.15.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowStats
Bioc Package Browser https://code.bioconductor.org/browse/flowStats/
Package Short Url https://bioconductor.org/packages/flowStats/
Package Downloads Report Download Stats