ecolitk
This is the development version of ecolitk; for the stable release version, see ecolitk.
All Bioconductor versions of ecolitk
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Meta-data and tools for E. coli
Bioconductor version: 3.24 · Package version: 1.85.0
Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.
Author: Laurent Gautier
Maintainer: Laurent Gautier <lgautier at gmail.com>
Citation
From within R, enter citation("ecolitk"):
Laurent Gautier. ecolitk: Meta-data and tools for E. coli. doi:10.18129/B9.bioc.ecolitk, R package version 1.85.0, https://bioconductor.org/packages/ecolitk.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ecolitk")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.85.0 |
| License | GPL (>= 2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 538 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/ecolitk/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ecolitk")| ecolitk | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ecolitk_1.85.0.tar.gz |
| Windows binary (x86_64) | ecolitk_1.85.0.zip |
| macOS binary (arm64) | ecolitk_1.85.0.tgz |
| macOS binary (x86_64) | ecolitk_1.85.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ecolitk |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ecolitk |
| Package Downloads Report | Download Stats |