• Home
• Bioconductor 3.24
• Software Packages
• discordant (development version)

discordant

This is the development version of discordant; for the stable release version, see discordant.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

The Discordant Method: A Novel Approach for Differential Correlation

DOI: 10.18129/B9.bioc.discordant

Bioconductor version: Development (3.24)

Discordant is an R package that identifies pairs of features that correlate differently between phenotypic groups, with application to -omics data sets. Discordant uses a mixture model that “bins” molecular feature pairs based on their type of coexpression or coabbundance. Algorithm is explained further in "Differential Correlation for Sequencing Data"" (Siska et al. 2016).

Author: Charlotte Siska [aut], McGrath Max [aut, cre], Katerina Kechris [aut, cph, ths]

Maintainer: McGrath Max <max.mcgrath at ucdenver.edu>

Citation (from within R, enter citation("discordant")):

Charlotte Siska, McGrath Max, Katerina Kechris. discordant: The Discordant Method: A Novel Approach for Differential Correlation. doi:10.18129/B9.bioc.discordant, R package version 1.37.0, https://bioconductor.org/packages/discordant.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("discordant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("discordant")

Details

Package Archives

Follow Installation instructions to use this package in your R session.