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daVis

Visualization Of Differential Expression Analysis

Bioconductor version: 3.24 · Package version: 0.99.4

This package contains utility functions to visualize the output from differential expression analysis. The input can be either a model or a list of top tables or a combination of the two. The model can be output from limma, edgeR or DESeq2.

DOI: 10.18129/B9.bioc.daVis

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("daVis")

Details

MaintainerKatarzyna Gorczak <katarzyna.gorczak@openanalytics.eu>
AuthorKatarzyna Gorczak [aut, cre], Laure Cougnaud [aut]
LicenseGPL-3
URLhttps://github.com/openanalytics/daVis
Bug Reportshttps://github.com/openanalytics/daVis/issues
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsDataRepresentation, DifferentialExpression, Microarray, RNASeq, Software, Visualization
Package Short Url https://bioconductor.org/packages/daVis/

Citation

From within R, enter citation("daVis"):

Katarzyna Gorczak, Laure Cougnaud. daVis: Visualization Of Differential Expression Analysis. doi:10.18129/B9.bioc.daVis, R package version 0.99.4, https://bioconductor.org/packages/daVis.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagedaVis_0.99.4.tar.gz
Windows binary (x86_64)daVis_0.99.4.zip
macOS binary (arm64)daVis_0.99.4.tgz
macOS binary (x86_64)daVis_0.99.4.tgz
Dependencies

Imports: edgeR, ggh4x, ggplot2, grDevices, limma, plyr, stats, utils, DESeq2, rlang, legendry, UpSetR

Suggests: AnnotationDbi, Biobase, ggrepel, ggtext, knitr, methods, org.Mm.eg.db, pander, plotly, rmarkdown, S4Vectors, scales, testthat, tools, BiocStyle