airpart
This is the development version of airpart; for the stable release version, see airpart.
All Bioconductor versions of airpart
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13
Differential cell-type-specific allelic imbalance
Bioconductor version: 3.24 · Package version: 1.21.0
Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.
Author: Wancen Mu [aut, cre] 
, Michael Love [aut, ctb]
Maintainer: Wancen Mu <wancen at live.unc.edu>
Citation
From within R, enter citation("airpart"):
Wancen Mu, Michael Love. airpart: Differential cell-type-specific allelic imbalance. doi:10.18129/B9.bioc.airpart, R package version 1.21.0, https://bioconductor.org/packages/airpart.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("airpart")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.21.0 |
| License | GPL-2 |
| URL | https://github.com/Wancen/airpart |
| Bug Reports | https://github.com/Wancen/airpart/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5 years) |
| Downloads rank | 1592 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ATACSeq, CellBiology, ChIPSeq, Clustering, DifferentialExpression, FunctionalGenomics, GeneExpression, GeneRegulation, GraphAndNetwork, QualityControl, RNASeq, Regression, Sequencing, SingleCell, Software, Transcription, TranscriptomeVariant |
| Package Short Url | https://bioconductor.org/packages/airpart/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("airpart")| Differential cell-type-specific allelic imbalance with airpart | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | airpart_1.21.0.tar.gz |
| Windows binary (x86_64) | airpart_1.21.0.zip |
| macOS binary (arm64) | airpart_1.21.0.tgz |
| macOS binary (x86_64) | airpart_1.21.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/airpart |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/airpart |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.1)
Imports: SingleCellExperiment, SummarizedExperiment, S4Vectors, scater, stats, smurf, apeglm (>= 1.13.3), emdbook, mclust, clue, dynamicTreeCut, matrixStats, dplyr, plyr, ggplot2, ComplexHeatmap, forestplot, RColorBrewer, rlang, lpSolve, grid, grDevices, graphics, utils, pbapply
Suggests: knitr, rmarkdown, roxygen2 (>= 6.0.0), testthat (>= 3.0.0), gplots, tidyr